Index

_

__init__() (variant_extractor.VariantExtractor method) (variant_extractor.variants.VariantRecord method)

A

alt (variant_extractor.variants.VariantRecord attribute)

alt_sv_breakend (variant_extractor.variants.VariantRecord attribute) alt_sv_shorthand (variant_extractor.variants.VariantRecord attribute)

B

bracket (variant_extractor.variants.BreakendSVRecord attribute)

BreakendSVRecord (class in variant_extractor.variants)

C

close() (variant_extractor.VariantExtractor method) CNV (variant_extractor.variants.VariantType attribute)

contig (variant_extractor.variants.BreakendSVRecord attribute) (variant_extractor.variants.VariantRecord attribute)

D

DEL (variant_extractor.variants.VariantType attribute)

DUP (variant_extractor.variants.VariantType attribute)

E

empty_dataframe() (variant_extractor.VariantExtractor static method)

end (variant_extractor.variants.VariantRecord attribute) extra (variant_extractor.variants.ShorthandSVRecord attribute)

F

filter (variant_extractor.variants.VariantRecord attribute)

format (variant_extractor.variants.VariantRecord property)

I

id (variant_extractor.variants.VariantRecord attribute) info (variant_extractor.variants.VariantRecord property)

INS (variant_extractor.variants.VariantType attribute) INV (variant_extractor.variants.VariantType attribute)

L

length (variant_extractor.variants.VariantRecord attribute)

M

module variant_extractor variant_extractor.variants

P

pos (variant_extractor.variants.BreakendSVRecord attribute) (variant_extractor.variants.VariantRecord attribute)

prefix (variant_extractor.variants.BreakendSVRecord attribute)

Q

qual (variant_extractor.variants.VariantRecord attribute)

R

ref (variant_extractor.variants.VariantRecord attribute)

S

samples (variant_extractor.variants.VariantRecord property) SGL (variant_extractor.variants.VariantType attribute)

ShorthandSVRecord (class in variant_extractor.variants) SNV (variant_extractor.variants.VariantType attribute) suffix (variant_extractor.variants.BreakendSVRecord attribute)

T

to_dataframe() (variant_extractor.VariantExtractor method)

TRA (variant_extractor.variants.VariantType attribute) type (variant_extractor.variants.ShorthandSVRecord attribute)

V

variant_extractor module variant_extractor.variants module

variant_type (variant_extractor.variants.VariantRecord attribute) VariantExtractor (class in variant_extractor) VariantRecord (class in variant_extractor.variants) VariantType (class in variant_extractor.variants)