CHANGELOG
v4.0.7 (2024-06-28)
Fix
fix: Remove author from init.py (
2d48c4a
)
Performance
perf: Reduce dataframe memory footprint (
011f2bb
)
v4.0.6 (2023-03-08)
Fix
fix: Fix missing fields in str conversion (
4bbef95
)
v4.0.5 (2023-03-06)
Fix
fix: Fix Python3.6 typings (
5b3bdd6
)
v4.0.4 (2023-03-02)
Performance
perf: Improve str performance (
ec14074
)
v4.0.3 (2023-03-02)
Performance
perf: Improve I/O speed by lazy loading fields (
93782fc
)
v4.0.2 (2023-02-16)
Fix
fix: Add init file to private module (
549b7c5
)
v4.0.1 (2023-02-15)
Fix
fix: Add PyPI docs (
fd3b89c
)
v4.0.0 (2023-02-10)
Breaking
fix: Match TRA to VCF specification
BREAKING CHANGE: Translocations are no longer named TRN, but TRA instead (1f7dd1e
)
Feature
Fix
fix: Fix typing Python3.6 (
1d72f80
)fix: Fix typing for Python3.6 (
1648bb7
)fix: Rename to breakend notation (
2d86782
)fix: Print format values in the correct order (
ee3d399
)fix: Fix float .2f VCF representation (
ed34a40
)fix: Trim extra \t (
ef55c36
)fix: Prioritize MATEID over coords for matching breakends (
c6d21bf
)fix: Unify different filters for paired breakends (
2407216
)fix: Change SNV length to 1 (
dfe6463
)
Unknown
fix: Fix wrong SAMPLEs in multiallelic variants (
7fc170f
)
v3.1.0 (2022-06-14)
Feature
feat: Replace N with correct nucleotide if possible (
8a260e1
)
Fix
v3.0.0 (2022-04-25)
Breaking
feat: Switch to VariantExtractor iterations through iter
BREAKING CHANGE: read_vcf() method no longer exists. Iterating through the VariantExtractor instance have the same effect. (b7d8e58
)
feat: read_vcf() returns a lazy generator
BREAKING CHANGE: VariantExtractor constructor parameter only_pass renamed to pass_only
BREAKING CHANGE: read_vcf() no longer returns a list, but a lazy generator (cd7decf
)
Feature
feat: Add str method to VariantRecord (
7f3aa7d
)
Fix
fix: Add dot if info is not defined (
70fa09b
)
v2.1.0 (2022-04-20)
Feature
Fix
v2.0.0 (2022-04-04)
Breaking
feat: Change alts to alt
BREAKING CHANGE: VariantRecord.alts no longer contains a list, it has been changed to VariantRecord.alt (8e1dd86
)
feat: Include variant_type in VariantRecord
BREAKING CHANGE: read_vcf() no longer returns a tuple of VariantType and VariantRecord. It now returns a list of just VariantRecord (2fe8b37
)
feat: Remove INDEL_DEL and INDEL_INS
BREAKING CHANGE: Now INDEL_DEL and INDEL_INS are treated like DEL and INS (e7bbd40
)