CHANGELOG
v4.0.10 (2025-03-26)
Bug Fixes
v4.0.9 (2025-03-26)
Bug Fixes
Allow for numbers in shorthand SVs (
8feb749
)
v4.0.8 (2024-07-17)
Bug Fixes
Dummy release to generate Zenodo DOI (
2c890f9
)
v4.0.7 (2024-06-28)
Bug Fixes
Remove author from init.py (
2d48c4a
)
Performance Improvements
Reduce dataframe memory footprint (
011f2bb
)
v4.0.6 (2023-03-08)
Bug Fixes
Fix missing fields in str conversion (
4bbef95
)
v4.0.5 (2023-03-06)
Bug Fixes
Fix Python3.6 typings (
5b3bdd6
)
v4.0.4 (2023-03-02)
Performance Improvements
Improve str performance (
ec14074
)
v4.0.3 (2023-03-02)
Performance Improvements
Improve I/O speed by lazy loading fields (
93782fc
)
v4.0.2 (2023-02-16)
Bug Fixes
Add init file to private module (
549b7c5
)
v4.0.1 (2023-02-15)
Bug Fixes
Add PyPI docs (
fd3b89c
)
v4.0.0 (2023-02-10)
Bug Fixes
Change SNV length to 1 (
dfe6463
)Fix float .2f VCF representation (
ed34a40
)Fix typing for Python3.6 (
1648bb7
)Fix typing Python3.6 (
1d72f80
)Match TRA to VCF specification (
1f7dd1e
)
BREAKING CHANGE: Translocations are no longer named TRN, but TRA instead
Features
Breaking Changes
Translocations are no longer named TRN, but TRA instead
v3.1.0 (2022-06-14)
Bug Fixes
Features
Replace N with correct nucleotide if possible (
8a260e1
)
v3.0.0 (2022-04-25)
Bug Fixes
Add dot if info is not defined (
70fa09b
)
Features
BREAKING CHANGE: VariantExtractor constructor parameter only_pass renamed to pass_only
BREAKING CHANGE: read_vcf() no longer returns a list, but a lazy generator
Switch to VariantExtractor iterations through iter (
b7d8e58
)
BREAKING CHANGE: read_vcf() method no longer exists. Iterating through the VariantExtractor instance have the same effect.
Breaking Changes
Read_vcf() method no longer exists. Iterating through the VariantExtractor instance have the same effect.
v2.1.0 (2022-04-20)
Bug Fixes
Features
v2.0.0 (2022-04-04)
Bug Fixes
Features
Add
qual
field (4d23686
)Add length field to VariantRecord (
9a0e446
)Add only_pass parameter (
39d7b41
)Change alts to alt (
8e1dd86
)
BREAKING CHANGE: VariantRecord.alts no longer contains a list, it has been changed to VariantRecord.alt
BREAKING CHANGE: read_vcf() no longer returns a tuple of VariantType and VariantRecord. It now returns a list of just VariantRecord
Remove INDEL_DEL and INDEL_INS (
e7bbd40
)
BREAKING CHANGE: Now INDEL_DEL and INDEL_INS are treated like DEL and INS